Application Index

Usage examples for SBGrid applications

The following pages provide usage info and examples for select applications in the SBGrid environment. For access to a full listing of applications, as well as documentation, manuals, application websites, etc, please visit : https://sbgrid.org/software

• AlphaFold
• AlphaFold3
• AlphaPulldown
• Arp/Warp registration
• CARELESS
• Coot: notes , managing title and version
• DiffDock
• EMAN2 with Theano
• EMBuild
• Local Reconstruction in SCIPION
• PHENIX - phenix.rosetta_refine
• RoseTTAFold All-Atom
• SCIPION - tutorials
• DIALS - Version control
• XDS (and XDSGUI) with HDF5 datasets